
Custom RT2 Profiler PCR Arrays
- Robust and reliable biomarker validation
- Flexible array format for over 100,000 genes
- Rigorous QC and QA process for accurate and reliable results
- Designed for routine use on any real-time cycler
- Ideal for verification of microarray or RNAseq results
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Cat No./ID:330171 Custom RT2 PCR Array Go to GeneGlobe96-well plate, 384-well plate, or Rotor-Disc 100 including assays, film, or cap strips |
Cat No./ID:330181 Custom RT2 PCR Array Additional Plate Go to GeneGlobeAdditional Custom RT2 PCR Array plate at time of initial order |
Product Details
Sensitivity
With the sensitivity of the RT2 First Strand Kit, as little as 1 ng or as much as 5 µg of total RNA per array plate provides greater than 80% present call rates (see figure "Positive results with as little as 25 ng RNA").Reproducibility
The complete PCR array system demonstrates strong correlations across technical replicates, lots and instruments with average correlation coefficients >0.99, ensuring reliable detection of differences in expression between biological samples (see figure "High reproducibility among different users").Specificity
The PCR array system, with high-quality input RNA, is guaranteed to yield single bands of the predicted size without primer-dimers or other secondary products, therefore providing highly accurate real-time PCR results (see figure "A single gene-specific product in every reaction").Uniform PCR amplification efficiency
Uniform PCR amplification efficiency is required for PCR array technology to allow accurate comparison of gene expressionacross all genes. The unique combination ofa proprietary primer design algorithm and rigorous testing of every primer assay guarantees the high performance of every primer assay on PCR arrays (see figure "PCR arrays yield highly accurate results").Available formats
Custom RT2 Profiler PCR Arraysare available in the following plate layouts (see the tables below and figure "Available plate layouts". Selectthe genes and the plate format required.Format | Number of plates (minimum) |
---|---|
8 genes, 12 samples per plate | 12 |
12genes,8 samples per plate | 12 |
16genes, 6 samples per plate | 12 |
24 genes, 4 samples per plate | 24 |
32genes,3 samples per plate | 24 |
48genes,2 samples per plate | 24 |
96genes,1 sample per plate | 24 |
All formats | Per additional 12 array |
Format | Number of plates (minimum) |
---|---|
8 genes,48 samples per plate | 6 |
12genes,32 samples per plate | 6 |
24 genes,16 samples per plate | 6 |
32genes,12 samples per plate | 6 |
48genes,8 samples per plate | 6 |
64genes,6 samples per plate | 6 |
96 genes, 4 samples per plate | 6 |
128genes,3 samples per plate | 6 |
192genes,2 samples per plate | 24 |
384genes,1 sample per plate | 24 |
All formats | Per additional6 array |
Simply mix the cDNA template with the appropriate ready-to-use PCR master mix, aliquot equal volumes to each well of the same plate, and then run the real-time PCR cycling program (see flowchart "Simple procedure"). CustomRT2 Profiler PCR Arrays are compatible with all QIAGEN, ABI, Bio-Rad, Eppendorf, Roche and Stratagene instruments.
Flexible layout and controls
CustomRT2 Profiler PCR Arrays are available in 96-well plate, 384-well plate and 100-well disc formats, and are used to monitor the expression of up to 84 or 370 genes related to a specific research area of interest, plus 5 housekeeping genes. Custom RT2 Profiler PCR Arrays mayalsoinclude control elements for:
- Data normalization
- Genomic DNA contamination detection
- RNA sample quality
- General PCR performance
- Easy-to-use data analysis
Data can be analyzed using an easy-to-use Excel-based data analysis template or web-based software. Data analysis is based on the ΔΔCT method with normalization of the raw data to either housekeeping genes.
Custom or Modified RT2 PCR Profiler Arrays offer a robust platform for biomarker screening and validation and can be used in all areas of biological and medical research, including:
- Cancer
- Inflammation and cytokine profiling
- Neuroscience
- Signal transduction pathways
- Cell adhesion and cell migration
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